Discussion:
bedToBigBed
沖 真弥
2011-10-14 03:36:53 UTC
Permalink
Hi.

I'd like to convert my BED files into BigBed by the use of your bedToBigBed program.
However, the program doesn't work even by following "Example Two" on your instruction of the program.

(Error messages)
-bash: ./bedToBigBed: Permission denied
-bash: bedToBigBed: command not found

Do I have to build or compile bedToBigBed before use?
If so, how to do?

I use Terminal on Mac OSX 10.7.1.

Sincerely,

Shinya
Galt Barber
2011-10-14 19:27:54 UTC
Permalink
Hi, Shinya!

Did you download the Mac version of the utility?
(The versions for other platforms would not
work on the Mac.)

Did you make it executable, i.e.

chmod +x ./bedToBigBed

./bedToBigBed

Note: use "." if you put it in the current directory.
Otherwise replace "." with the real path in the
instructions above.

-Galt
Post by 沖 真弥
Hi.
I'd like to convert my BED files into BigBed by the use of your bedToBigBed program.
However, the program doesn't work even by following "Example Two" on your instruction of the program.
(Error messages)
-bash: ./bedToBigBed: Permission denied
-bash: bedToBigBed: command not found
Do I have to build or compile bedToBigBed before use?
If so, how to do?
I use Terminal on Mac OSX 10.7.1.
Sincerely,
Shinya
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