Marco Santagostino

2011-06-13 16:32:23 UTC

Dear Sirs,

were can I find the parameters used to generate the RepeatMasker track?

The problem is as it follows: I need to take from the horse genome a

certain repetitive element, and I'm supposed to classify all the hits

found according to their identity (with respect to the consensus

sequence). Some collegues of mine already took all the sequences with at

least 98% of identity by BLAST search, so, now I'm supposed to find

those which have a lower identity, but I can't find out how to set up

the Table Browser so that it finds the elements with the identity that I

chose. How do I set up the table browser so, for exemple, it recovers

only the elements with at least 90% of identity with the consensus sequence?

Thank you,

Marco Santagostino

were can I find the parameters used to generate the RepeatMasker track?

The problem is as it follows: I need to take from the horse genome a

certain repetitive element, and I'm supposed to classify all the hits

found according to their identity (with respect to the consensus

sequence). Some collegues of mine already took all the sequences with at

least 98% of identity by BLAST search, so, now I'm supposed to find

those which have a lower identity, but I can't find out how to set up

the Table Browser so that it finds the elements with the identity that I

chose. How do I set up the table browser so, for exemple, it recovers

only the elements with at least 90% of identity with the consensus sequence?

Thank you,

Marco Santagostino

--

Marco Santagostino, PhD

Lab. Molecular and Cellular Biology

Dept. Genetics and Microbiology, University of Pavia

Ferrata street, 1 - 27100 Pavia, Italy

Tel.: +39 0382 985540

Fax: +39 0382 528496

e-mail: ***@unipv.it

Marco Santagostino, PhD

Lab. Molecular and Cellular Biology

Dept. Genetics and Microbiology, University of Pavia

Ferrata street, 1 - 27100 Pavia, Italy

Tel.: +39 0382 985540

Fax: +39 0382 528496

e-mail: ***@unipv.it